PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA024146-PA
Common NameOsI_26369
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 256aa    MW: 27842.7 Da    PI: 5.9248
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA024146-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.7e-1196143454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++  rE+ RRd++N++f eL  +l +    + +K++K++iL  A++ + +L
  BGIOSGA024146-PA  96 SKACREKVRRDKLNERFLELGAVLEPG---KTPKMDKSSILNDAIRVMAEL 143
                       6789**********************9...9**************998777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-1483159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.91E-990148No hitNo description
PROSITE profilePS5088813.33292143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-1493166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-896143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-998149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MASPEGSTWV FDCPLMDDLA AAAGFDAAPA GGFYWTTPAP PQAALQPPPP PQQPVAPATA  60
APNACAEING SVDCEHGKEQ PTNKRPRSES GTRPSSKACR EKVRRDKLNE RFLELGAVLE  120
PGKTPKMDKS SILNDAIRVM AELRSEAQKL KESNESLQEK IKELKAEKNE LRDEKQKLKA  180
EKESLEQQIK FLNARPSFVP HPPVIPASAF TAPQGQAAGQ KLMMPVIGYP GFPMWQFMPP  240
SDVDTTDDTK SCPPVA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.265080.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329783790.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8305660.0CT830566.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA057B18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647705.10.0PREDICTED: transcription factor ILR3
SwissprotQ9FH371e-80ILR3_ARATH; Transcription factor ILR3
TrEMBLB8B7960.0B8B796_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA024146-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20233885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.11e-75bHLH family protein